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  5. AT5G46100

AT5G46100


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000212 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G46100
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AT3G14580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G11690 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006264 mitochondrial DNA replication IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
BP GO:0008285 negative regulation of cell population proliferation IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0031590 wybutosine metabolic process IEP HCCA
BP GO:0031591 wybutosine biosynthetic process IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0032876 negative regulation of DNA endoreduplication IEP HCCA
BP GO:0033258 plastid DNA metabolic process IEP HCCA
BP GO:0033259 plastid DNA replication IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090329 regulation of DNA-dependent DNA replication IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 413 439
IPR002885 Pentatricopeptide_repeat 335 362
IPR002885 Pentatricopeptide_repeat 291 323
IPR002885 Pentatricopeptide_repeat 186 219
IPR002885 Pentatricopeptide_repeat 225 274
IPR002885 Pentatricopeptide_repeat 120 168
PLAZA 3.0 Dicots AT5G46100