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  5. AT5G46190

AT5G46190


Description : RNA-binding KH domain-containing protein


Gene families : OG_01_0012126 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G46190
Cluster HCCA: Cluster_224


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP HCCA
CC GO:0000785 chromatin IEP HCCA
CC GO:0000813 ESCRT I complex IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
BP GO:0002684 positive regulation of immune system process IEP HCCA
BP GO:0002833 positive regulation of response to biotic stimulus IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005217 intracellular ligand-gated ion channel activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005819 spindle IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006874 cellular calcium ion homeostasis IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009292 genetic transfer IEP HCCA
BP GO:0009294 DNA mediated transformation IEP HCCA
BP GO:0009566 fertilization IEP HCCA
BP GO:0009567 double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009911 positive regulation of flower development IEP HCCA
BP GO:0010084 specification of animal organ axis polarity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010928 regulation of auxin mediated signaling pathway IEP HCCA
BP GO:0010942 positive regulation of cell death IEP HCCA
MF GO:0015276 ligand-gated ion channel activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0031176 endo-1,4-beta-xylanase activity IEP HCCA
BP GO:0031349 positive regulation of defense response IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
BP GO:0032103 positive regulation of response to external stimulus IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034052 positive regulation of plant-type hypersensitive response IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035265 organ growth IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0043068 positive regulation of programmed cell death IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044764 multi-organism cellular process IEP HCCA
BP GO:0045089 positive regulation of innate immune response IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050778 positive regulation of immune response IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051304 chromosome separation IEP HCCA
BP GO:0051307 meiotic chromosome separation IEP HCCA
BP GO:0055074 calcium ion homeostasis IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0070300 phosphatidic acid binding IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
MF GO:0097599 xylanase activity IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1905428 regulation of plant organ formation IEP HCCA
BP GO:2000025 regulation of leaf formation IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 152 222
IPR004088 KH_dom_type_1 320 371
IPR004088 KH_dom_type_1 46 96
IPR004088 KH_dom_type_1 575 638
IPR004088 KH_dom_type_1 402 467
PLAZA 3.0 Dicots AT5G46190