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  5. AT5G48040

AT5G48040


Description : Ubiquitin carboxyl-terminal hydrolase family protein


Gene families : OG_01_0006506 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006506_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G48040
Cluster HCCA: Cluster_252


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000795 synaptonemal complex IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004407 histone deacetylase activity IEP HCCA
CC GO:0005677 chromatin silencing complex IEP HCCA
CC GO:0005712 chiasma IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009292 genetic transfer IEP HCCA
BP GO:0009294 DNA mediated transformation IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0010154 fruit development IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
CC GO:0032389 MutLalpha complex IEP HCCA
CC GO:0032390 MutLbeta complex IEP HCCA
MF GO:0033558 protein deacetylase activity IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044764 multi-organism cellular process IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0099086 synaptonemal structure IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990391 DNA repair complex IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 40 364
PLAZA 3.0 Dicots AT5G48040