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  5. AT5G48330

AT5G48330


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG_01_0008286 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G48330
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
Pp3c3_6440V3.1 No alias Regulator of chromosome condensation (RCC1) family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005794 Golgi apparatus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005496 steroid binding IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
MF GO:0008142 oxysterol binding IEP HCCA
BP GO:0008285 negative regulation of cell population proliferation IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008526 phosphatidylinositol transfer activity IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
MF GO:0010427 abscisic acid binding IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
MF GO:0019840 isoprenoid binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032934 sterol binding IEP HCCA
MF GO:0033293 monocarboxylic acid binding IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
MF GO:0042562 hormone binding IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
MF GO:0043178 alcohol binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
MF GO:0120014 phospholipid transfer activity IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 405 452
IPR000408 Reg_chr_condens 156 206
IPR000408 Reg_chr_condens 357 401
PLAZA 3.0 Dicots AT5G48330