- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Copper transport protein family
Gene families : OG_01_0000682 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000682_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT5G52740 | |
| Cluster | HCCA: Cluster_94 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G52680 | No alias | Copper transport protein family | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT5G52730 | No alias | Copper transport protein family | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005575 | cellular_component | ND | Interproscan |
| BP | GO:0009627 | systemic acquired resistance | RCA | Interproscan |
| BP | GO:0034976 | response to endoplasmic reticulum stress | RCA | Interproscan |
| MF | GO:0046872 | metal ion binding | ISS | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0005513 | detection of calcium ion | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006995 | cellular response to nitrogen starvation | IEP | HCCA |
| BP | GO:0009269 | response to desiccation | IEP | HCCA |
| BP | GO:0009593 | detection of chemical stimulus | IEP | HCCA |
| BP | GO:0009612 | response to mechanical stimulus | IEP | HCCA |
| BP | GO:0009696 | salicylic acid metabolic process | IEP | HCCA |
| BP | GO:0009697 | salicylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
| BP | GO:0018958 | phenol-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0019722 | calcium-mediated signaling | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| BP | GO:0019932 | second-messenger-mediated signaling | IEP | HCCA |
| BP | GO:0031347 | regulation of defense response | IEP | HCCA |
| BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
| BP | GO:0035556 | intracellular signal transduction | IEP | HCCA |
| BP | GO:0042537 | benzene-containing compound metabolic process | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0043562 | cellular response to nitrogen levels | IEP | HCCA |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | HCCA |
| BP | GO:0046189 | phenol-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0048583 | regulation of response to stimulus | IEP | HCCA |
| BP | GO:0051592 | response to calcium ion | IEP | HCCA |
| BP | GO:0071478 | cellular response to radiation | IEP | HCCA |
| BP | GO:0071482 | cellular response to light stimulus | IEP | HCCA |
| BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0080134 | regulation of response to stress | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | HCCA |
| BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| PLAZA 3.0 Dicots | AT5G52740 |