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  5. AT5G55840

AT5G55840


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000698 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000698_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G55840
Cluster HCCA: Cluster_101


Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0001708 cell fate specification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005451 monovalent cation:proton antiporter activity IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006264 mitochondrial DNA replication IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
MF GO:0010348 lithium:proton antiporter activity IEP HCCA
BP GO:0010351 lithium ion transport IEP HCCA
BP GO:0010352 lithium ion export across the plasma membrane IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0015081 sodium ion transmembrane transporter activity IEP HCCA
MF GO:0015298 solute:cation antiporter activity IEP HCCA
MF GO:0015299 solute:proton antiporter activity IEP HCCA
MF GO:0015385 sodium:proton antiporter activity IEP HCCA
MF GO:0015491 cation:cation antiporter activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0033258 plastid DNA metabolic process IEP HCCA
BP GO:0033259 plastid DNA replication IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0040014 regulation of multicellular organism growth IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048467 gynoecium development IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0051139 metal ion:proton antiporter activity IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
BP GO:0070839 metal ion export IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098655 cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:0140115 export across plasma membrane IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1006 1034
IPR002885 Pentatricopeptide_repeat 165 193
IPR002885 Pentatricopeptide_repeat 444 490
IPR002885 Pentatricopeptide_repeat 757 806
IPR002885 Pentatricopeptide_repeat 581 630
IPR002885 Pentatricopeptide_repeat 652 700
IPR002885 Pentatricopeptide_repeat 196 244
IPR002885 Pentatricopeptide_repeat 371 420
IPR002885 Pentatricopeptide_repeat 266 315
IPR002885 Pentatricopeptide_repeat 1038 1084
IPR033443 PPR_long 848 987
IPR002885 Pentatricopeptide_repeat 543 575
IPR002885 Pentatricopeptide_repeat 333 364
PLAZA 3.0 Dicots AT5G55840