AT5G56200

Description : C2H2 type zinc finger transcription factor family

Gene families : OG_01_0000119 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G56200
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
AT1G26590	No alias	C2H2-like zinc finger protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G26610	No alias	C2H2-like zinc finger protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G04404	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G61470	No alias	C2H2-like zinc finger protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
MF	GO:0008270	zinc ion binding	ISS	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003886	DNA (cytosine-5-)-methyltransferase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	HCCA
MF	GO:0009008	DNA-methyltransferase activity	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
MF	GO:0015386	potassium:proton antiporter activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0022821	potassium ion antiporter activity	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060688	regulation of morphogenesis of a branching structure	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1905428	regulation of plant organ formation	IEP	HCCA
BP	GO:2000032	regulation of secondary shoot formation	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

No InterPro domains available for this sequence

External Links

PLAZA 3.0 Dicots	AT5G56200