1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G56320

AT5G56320


Description : expansin A14


Gene families : OG_01_0000011 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000011_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56320
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AT1G20190 No alias expansin 11 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G69530 No alias expansin A1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G37640 No alias Barwin-like endoglucanases superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G40610 No alias expansin A8 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G15370 No alias expansin 12 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G29030 No alias expansin A5 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G01630 No alias expansin A17 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g18610.1 No alias alpha-class expansin 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_18040V3.1 No alias expansin A14 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_19720V3.1 No alias expansin A1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0009826 unidimensional cell growth ISS Interproscan
BP GO:0009826 unidimensional cell growth NAS Interproscan
BP GO:0009828 plant-type cell wall loosening ISS Interproscan
BP GO:0009828 plant-type cell wall loosening NAS Interproscan
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0000217 DNA secondary structure binding IEP HCCA
CC GO:0000323 lytic vacuole IEP HCCA
MF GO:0003680 minor groove of adenine-thymine-rich DNA binding IEP HCCA
MF GO:0003838 sterol 24-C-methyltransferase activity IEP HCCA
MF GO:0004311 farnesyltranstransferase activity IEP HCCA
MF GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006812 cation transport IEP HCCA
MF GO:0008083 growth factor activity IEP HCCA
MF GO:0008169 C-methyltransferase activity IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0008422 beta-glucosidase activity IEP HCCA
MF GO:0008446 GDP-mannose 4,6-dehydratase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0008825 cyclopropane-fatty-acyl-phospholipid synthase activity IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009647 skotomorphogenesis IEP HCCA
MF GO:0009672 auxin:proton symporter activity IEP HCCA
BP GO:0009746 response to hexose IEP HCCA
BP GO:0009749 response to glucose IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
BP GO:0009834 plant-type secondary cell wall biogenesis IEP HCCA
CC GO:0009925 basal plasma membrane IEP HCCA
BP GO:0009958 positive gravitropism IEP HCCA
MF GO:0010329 auxin efflux transmembrane transporter activity IEP HCCA
BP GO:0010359 regulation of anion channel activity IEP HCCA
BP GO:0010453 regulation of cell fate commitment IEP HCCA
BP GO:0010455 positive regulation of cell fate commitment IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
BP GO:0016128 phytosteroid metabolic process IEP HCCA
BP GO:0016129 phytosteroid biosynthetic process IEP HCCA
BP GO:0016131 brassinosteroid metabolic process IEP HCCA
BP GO:0016132 brassinosteroid biosynthetic process IEP HCCA
BP GO:0022898 regulation of transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030545 signaling receptor regulator activity IEP HCCA
MF GO:0030546 signaling receptor activator activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032409 regulation of transporter activity IEP HCCA
BP GO:0032412 regulation of ion transmembrane transporter activity IEP HCCA
BP GO:0032879 regulation of localization IEP HCCA
BP GO:0034284 response to monosaccharide IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
MF GO:0043891 glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity IEP HCCA
BP GO:0044070 regulation of anion transport IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0045165 cell fate commitment IEP HCCA
BP GO:0045597 positive regulation of cell differentiation IEP HCCA
BP GO:0046685 response to arsenic-containing substance IEP HCCA
MF GO:0048018 receptor ligand activity IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048443 stamen development IEP HCCA
BP GO:0048658 anther wall tapetum development IEP HCCA
BP GO:0048766 root hair initiation IEP HCCA
BP GO:0048829 root cap development IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
CC GO:0071944 cell periphery IEP HCCA
BP GO:0080144 amino acid homeostasis IEP HCCA
MF GO:0098772 molecular function regulator IEP HCCA
BP GO:0120178 steroid hormone biosynthetic process IEP HCCA
BP GO:1903959 regulation of anion transmembrane transport IEP HCCA
BP GO:2000012 regulation of auxin polar transport IEP HCCA
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 64 149
IPR007117 Expansin_CBD 160 237
PLAZA 3.0 Dicots AT5G56320