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  5. AT5G56440

AT5G56440


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG_01_0000027 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56440
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AT3G12840 No alias unknown protein; Has 0 Blast hits to 0 proteins in 0... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G00160 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G13965 No alias Protein with RNI-like/FBD-like domains 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56370 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56390 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56400 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56430 No alias F-box/FBD-like domains containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G56810 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G62970 No alias Protein with RNI-like/FBD-like domains 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000182 rDNA binding IEP HCCA
BP GO:0000373 Group II intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0003998 acylphosphatase activity IEP HCCA
MF GO:0004300 enoyl-CoA hydratase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004564 beta-fructofuranosidase activity IEP HCCA
MF GO:0004575 sucrose alpha-glucosidase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004722 protein serine/threonine phosphatase activity IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0005987 sucrose catabolic process IEP HCCA
MF GO:0008419 RNA lariat debranching enzyme activity IEP HCCA
BP GO:0009313 oligosaccharide catabolic process IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009649 entrainment of circadian clock IEP HCCA
MF GO:0015203 polyamine transmembrane transporter activity IEP HCCA
BP GO:0015846 polyamine transport IEP HCCA
MF GO:0015926 glucosidase activity IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0043153 entrainment of circadian clock by photoperiod IEP HCCA
BP GO:0044275 cellular carbohydrate catabolic process IEP HCCA
BP GO:0046352 disaccharide catabolic process IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
MF GO:0090599 alpha-glucosidase activity IEP HCCA
BP GO:0097031 obsolete mitochondrial respiratory chain complex I biogenesis IEP HCCA
BP GO:0097034 obsolete mitochondrial respiratory chain complex IV biogenesis IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 3 41
IPR006566 FBD 352 397
IPR013101 Leu-rich_rpt_2 152 177
PLAZA 3.0 Dicots AT5G56440