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AT5G58210


Description : hydroxyproline-rich glycoprotein family protein


Gene families : OG_01_0006738 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006738_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G58210
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Pp3c5_17310V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0001709 cell fate determination IEP HCCA
MF GO:0003880 protein C-terminal carboxyl O-methyltransferase activity IEP HCCA
MF GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006481 C-terminal protein methylation IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
MF GO:0009824 AMP dimethylallyltransferase activity IEP HCCA
BP GO:0010076 maintenance of floral meristem identity IEP HCCA
BP GO:0010077 maintenance of inflorescence meristem identity IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
MF GO:0010340 carboxyl-O-methyltransferase activity IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
BP GO:0018410 C-terminal protein amino acid modification IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
CC GO:0031519 PcG protein complex IEP HCCA
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
CC GO:0035102 PRC1 complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
MF GO:0051998 protein carboxyl O-methyltransferase activity IEP HCCA
MF GO:0052381 tRNA dimethylallyltransferase activity IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT5G58210