AT5G59800

Description : methyl-CPG-binding domain 7

Gene families : OG_01_0002503 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002503_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G59800
Cluster	HCCA: Cluster_76

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008327	methyl-CpG binding	IDA	Interproscan
MF	GO:0008327	methyl-CpG binding	ISS	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
CC	GO:0010369	chromocenter	IDA	Interproscan
MF	GO:0019899	enzyme binding	IPI	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0080167	response to karrikin	IEP	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
CC	GO:0000418	RNA polymerase IV complex	IEP	HCCA
CC	GO:0000419	RNA polymerase V complex	IEP	HCCA
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	HCCA
MF	GO:0000773	phosphatidyl-N-methylethanolamine N-methyltransferase activity	IEP	HCCA
BP	GO:0001709	cell fate determination	IEP	HCCA
MF	GO:0004089	carbonate dehydratase activity	IEP	HCCA
MF	GO:0004551	nucleotide diphosphatase activity	IEP	HCCA
MF	GO:0004605	phosphatidate cytidylyltransferase activity	IEP	HCCA
MF	GO:0004860	protein kinase inhibitor activity	IEP	HCCA
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	HCCA
MF	GO:0005102	signaling receptor binding	IEP	HCCA
MF	GO:0005354	galactose transmembrane transporter activity	IEP	HCCA
MF	GO:0005539	glycosaminoglycan binding	IEP	HCCA
CC	GO:0005665	RNA polymerase II, core complex	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
CC	GO:0005849	mRNA cleavage factor complex	IEP	HCCA
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009845	seed germination	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010152	pollen maturation	IEP	HCCA
BP	GO:0010162	seed dormancy process	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
MF	GO:0015145	monosaccharide transmembrane transporter activity	IEP	HCCA
MF	GO:0015149	hexose transmembrane transporter activity	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0016607	nuclear speck	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016819	hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides	IEP	HCCA
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	HCCA
MF	GO:0019210	kinase inhibitor activity	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022611	dormancy process	IEP	HCCA
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	HCCA
MF	GO:0030332	cyclin binding	IEP	HCCA
CC	GO:0030880	RNA polymerase complex	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
MF	GO:0035064	methylated histone binding	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
MF	GO:0042834	peptidoglycan binding	IEP	HCCA
MF	GO:0043530	adenosine 5'-monophosphoramidase activity	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0047627	adenylylsulfatase activity	IEP	HCCA
MF	GO:0047710	bis(5'-adenosyl)-triphosphatase activity	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0070567	cytidylyltransferase activity	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
MF	GO:0080101	phosphatidyl-N-dimethylethanolamine N-methyltransferase activity	IEP	HCCA
MF	GO:0140030	modification-dependent protein binding	IEP	HCCA
MF	GO:0140034	methylation-dependent protein binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	HCCA
BP	GO:1904030	negative regulation of cyclin-dependent protein kinase activity	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001739	Methyl_CpG_DNA-bd	176	227
IPR001739	Methyl_CpG_DNA-bd	115	167

External Links

PLAZA 3.0 Dicots	AT5G59800

AT5G59800

Expression Profile

Co-expression Networks

Functional Annotation