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  5. AT5G60870

AT5G60870


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG_01_0006330 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006330_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G60870
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_6070V3.1 No alias Regulator of chromosome condensation (RCC1) family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
BP GO:0008380 RNA splicing IMP Interproscan
BP GO:0032981 mitochondrial respiratory chain complex I assembly IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000087 mitotic M phase IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
BP GO:0000279 M phase IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0001709 cell fate determination IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003880 protein C-terminal carboxyl O-methyltransferase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006481 C-terminal protein methylation IEP HCCA
BP GO:0006513 protein monoubiquitination IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
MF GO:0009824 AMP dimethylallyltransferase activity IEP HCCA
BP GO:0009934 regulation of meristem structural organization IEP HCCA
BP GO:0010076 maintenance of floral meristem identity IEP HCCA
BP GO:0010077 maintenance of inflorescence meristem identity IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
MF GO:0010340 carboxyl-O-methyltransferase activity IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0018410 C-terminal protein amino acid modification IEP HCCA
BP GO:0022403 cell cycle phase IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
CC GO:0031519 PcG protein complex IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
CC GO:0035102 PRC1 complex IEP HCCA
BP GO:0042278 purine nucleoside metabolic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044848 biological phase IEP HCCA
BP GO:0046128 purine ribonucleoside metabolic process IEP HCCA
BP GO:0048598 embryonic morphogenesis IEP HCCA
MF GO:0051998 protein carboxyl O-methyltransferase activity IEP HCCA
MF GO:0052381 tRNA dimethylallyltransferase activity IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0080180 2-methylguanosine metabolic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0098763 mitotic cell cycle phase IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:1901068 guanosine-containing compound metabolic process IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 171 219
IPR000408 Reg_chr_condens 332 381
IPR000408 Reg_chr_condens 385 440
IPR000408 Reg_chr_condens 222 277
IPR000408 Reg_chr_condens 118 167
IPR000408 Reg_chr_condens 49 81
IPR000408 Reg_chr_condens 280 329
PLAZA 3.0 Dicots AT5G60870