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  5. AT1G26900

AT1G26900


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016023 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G26900
Cluster HCCA: Cluster_80


Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000913 preprophase band assembly IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP HCCA
MF GO:0004723 calcium-dependent protein serine/threonine phosphatase activity IEP HCCA
MF GO:0005200 structural constituent of cytoskeleton IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005819 spindle IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0007135 meiosis II IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
CC GO:0009504 cell plate IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009896 positive regulation of catabolic process IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010214 seed coat development IEP HCCA
CC GO:0010445 nuclear dicing body IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
MF GO:0016906 sterol 3-beta-glucosyltransferase activity IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0031053 primary miRNA processing IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045732 positive regulation of protein catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051445 regulation of meiotic cell cycle IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0051879 Hsp90 protein binding IEP HCCA
BP GO:0061983 meiosis II cell cycle process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097472 cyclin-dependent protein kinase activity IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:2000011 regulation of adaxial/abaxial pattern formation IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 392 442
IPR002885 Pentatricopeptide_repeat 291 338
IPR002885 Pentatricopeptide_repeat 193 221
IPR002885 Pentatricopeptide_repeat 469 491
IPR002885 Pentatricopeptide_repeat 91 121
IPR002885 Pentatricopeptide_repeat 164 188
PLAZA 3.0 Dicots AT1G26900