1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G62950

AT5G62950


Description : RNA polymerase II, Rpb4, core protein


Gene families : OG_01_0004982 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004982_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G62950
Cluster HCCA: Cluster_131


Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000009 alpha-1,6-mannosyltransferase activity IEP HCCA
MF GO:0000030 mannosyltransferase activity IEP HCCA
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
CC GO:0000214 tRNA-intron endonuclease complex IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
MF GO:0004788 thiamine diphosphokinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006352 DNA-templated transcription, initiation IEP HCCA
BP GO:0006360 transcription by RNA polymerase I IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006573 valine metabolic process IEP HCCA
BP GO:0006574 valine catabolic process IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009083 branched-chain amino acid catabolic process IEP HCCA
BP GO:0009789 positive regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0010219 regulation of vernalization response IEP HCCA
BP GO:0010221 negative regulation of vernalization response IEP HCCA
BP GO:0010942 positive regulation of cell death IEP HCCA
BP GO:0016032 viral process IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030433 ubiquitin-dependent ERAD pathway IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
CC GO:0031371 ubiquitin conjugating enzyme complex IEP HCCA
CC GO:0031372 UBC13-MMS2 complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0036503 ERAD pathway IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0043068 positive regulation of programmed cell death IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0045926 negative regulation of growth IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046786 viral replication complex formation and maintenance IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR005574 RPB4/RPC9 10 114
PLAZA 3.0 Dicots AT5G62950