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  5. AT5G64320

AT5G64320


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000212 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G64320
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AT1G02060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G11630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G01400 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G11690 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0008285 negative regulation of cell population proliferation IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0048766 root hair initiation IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 218 248
IPR002885 Pentatricopeptide_repeat 250 299
IPR002885 Pentatricopeptide_repeat 667 713
IPR002885 Pentatricopeptide_repeat 528 576
IPR002885 Pentatricopeptide_repeat 457 505
IPR002885 Pentatricopeptide_repeat 597 646
IPR002885 Pentatricopeptide_repeat 387 436
IPR002885 Pentatricopeptide_repeat 350 380
IPR002885 Pentatricopeptide_repeat 316 345
PLAZA 3.0 Dicots AT5G64320