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Description : RNA-binding (RRM/RBD/RNP motifs) family protein
Gene families : OG_01_0001258 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001258_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT5G65260 | |
| Cluster | HCCA: Cluster_22 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Mp8g03090.1 | No alias | poly(A) RNA polymerase regulatory protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c18_12120V3.1 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.01 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISS | Interproscan |
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005654 | nucleoplasm | IEP | HCCA |
| BP | GO:0006301 | postreplication repair | IEP | HCCA |
| BP | GO:0006413 | translational initiation | IEP | HCCA |
| BP | GO:0006605 | protein targeting | IEP | HCCA |
| BP | GO:0006625 | protein targeting to peroxisome | IEP | HCCA |
| BP | GO:0006626 | protein targeting to mitochondrion | IEP | HCCA |
| BP | GO:0006928 | movement of cell or subcellular component | IEP | HCCA |
| BP | GO:0006935 | chemotaxis | IEP | HCCA |
| BP | GO:0007530 | sex determination | IEP | HCCA |
| BP | GO:0010183 | pollen tube guidance | IEP | HCCA |
| BP | GO:0010628 | positive regulation of gene expression | IEP | HCCA |
| BP | GO:0015919 | peroxisomal membrane transport | IEP | HCCA |
| BP | GO:0016558 | protein import into peroxisome matrix | IEP | HCCA |
| CC | GO:0016604 | nuclear body | IEP | HCCA |
| CC | GO:0016607 | nuclear speck | IEP | HCCA |
| BP | GO:0030029 | actin filament-based process | IEP | HCCA |
| BP | GO:0030048 | actin filament-based movement | IEP | HCCA |
| BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
| BP | GO:0034613 | cellular protein localization | IEP | HCCA |
| CC | GO:0035145 | exon-exon junction complex | IEP | HCCA |
| BP | GO:0040011 | locomotion | IEP | HCCA |
| BP | GO:0042330 | taxis | IEP | HCCA |
| BP | GO:0043574 | peroxisomal transport | IEP | HCCA |
| BP | GO:0044743 | protein transmembrane import into intracellular organelle | IEP | HCCA |
| BP | GO:0050918 | positive chemotaxis | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051645 | Golgi localization | IEP | HCCA |
| BP | GO:0051646 | mitochondrion localization | IEP | HCCA |
| BP | GO:0060151 | peroxisome localization | IEP | HCCA |
| BP | GO:0065002 | intracellular protein transmembrane transport | IEP | HCCA |
| BP | GO:0070585 | protein localization to mitochondrion | IEP | HCCA |
| BP | GO:0071806 | protein transmembrane transport | IEP | HCCA |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
| BP | GO:0072655 | establishment of protein localization to mitochondrion | IEP | HCCA |
| BP | GO:0072662 | protein localization to peroxisome | IEP | HCCA |
| BP | GO:0072663 | establishment of protein localization to peroxisome | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 94 | 162 |
| PLAZA 3.0 Dicots | AT5G65260 |