- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Gene families : OG_01_0007070 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007070_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT5G65490 | |
| Cluster | HCCA: Cluster_38 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0008150 | biological_process | ND | Interproscan |
| CC | GO:0009507 | chloroplast | ISM | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006310 | DNA recombination | IEP | HCCA |
| BP | GO:0006808 | regulation of nitrogen utilization | IEP | HCCA |
| MF | GO:0008901 | ferredoxin hydrogenase activity | IEP | HCCA |
| BP | GO:0009626 | plant-type hypersensitive response | IEP | HCCA |
| BP | GO:0009688 | abscisic acid biosynthetic process | IEP | HCCA |
| BP | GO:0009960 | endosperm development | IEP | HCCA |
| BP | GO:0010212 | response to ionizing radiation | IEP | HCCA |
| BP | GO:0010225 | response to UV-C | IEP | HCCA |
| BP | GO:0010383 | cell wall polysaccharide metabolic process | IEP | HCCA |
| BP | GO:0010410 | hemicellulose metabolic process | IEP | HCCA |
| BP | GO:0010413 | glucuronoxylan metabolic process | IEP | HCCA |
| BP | GO:0016106 | sesquiterpenoid biosynthetic process | IEP | HCCA |
| MF | GO:0016695 | oxidoreductase activity, acting on hydrogen as donor | IEP | HCCA |
| MF | GO:0016699 | oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor | IEP | HCCA |
| MF | GO:0019003 | GDP binding | IEP | HCCA |
| MF | GO:0031072 | heat shock protein binding | IEP | HCCA |
| CC | GO:0031306 | intrinsic component of mitochondrial outer membrane | IEP | HCCA |
| CC | GO:0031307 | integral component of mitochondrial outer membrane | IEP | HCCA |
| BP | GO:0031647 | regulation of protein stability | IEP | HCCA |
| CC | GO:0032592 | integral component of mitochondrial membrane | IEP | HCCA |
| BP | GO:0034050 | programmed cell death induced by symbiont | IEP | HCCA |
| MF | GO:0042393 | histone binding | IEP | HCCA |
| BP | GO:0043289 | apocarotenoid biosynthetic process | IEP | HCCA |
| BP | GO:0044038 | cell wall macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0045491 | xylan metabolic process | IEP | HCCA |
| BP | GO:0045492 | xylan biosynthetic process | IEP | HCCA |
| BP | GO:0050821 | protein stabilization | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0051702 | biological process involved in interaction with symbiont | IEP | HCCA |
| MF | GO:0051879 | Hsp90 protein binding | IEP | HCCA |
| BP | GO:0070589 | cellular component macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0070592 | cell wall polysaccharide biosynthetic process | IEP | HCCA |
| CC | GO:0098573 | intrinsic component of mitochondrial membrane | IEP | HCCA |
| BP | GO:1902645 | tertiary alcohol biosynthetic process | IEP | HCCA |
| BP | GO:2001020 | regulation of response to DNA damage stimulus | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR010770 | Ecd | 22 | 603 |
| PLAZA 3.0 Dicots | AT5G65490 |