AT5G66350

Description : Lateral root primordium (LRP) protein-related

Gene families : OG_01_0001043 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001043_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G66350
Cluster	HCCA: Cluster_190

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT1G19790	No alias	SHI-related sequence 7	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005634	nucleus	TAS	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009739	response to gibberellin	IMP	Interproscan
BP	GO:0009740	gibberellic acid mediated signaling pathway	TAS	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046982	protein heterodimerization activity	IPI	Interproscan
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
BP	GO:0003008	system process	IEP	HCCA
BP	GO:0003013	circulatory system process	IEP	HCCA
BP	GO:0003018	vascular process in circulatory system	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0005372	water transmembrane transporter activity	IEP	HCCA
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0006598	polyamine catabolic process	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009798	axis specification	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010022	meristem determinacy	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010052	guard cell differentiation	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010088	phloem development	IEP	HCCA
BP	GO:0010232	vascular transport	IEP	HCCA
BP	GO:0010233	phloem transport	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
BP	GO:0010374	stomatal complex development	IEP	HCCA
BP	GO:0010434	bract formation	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010582	floral meristem determinacy	IEP	HCCA
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	HCCA
MF	GO:0015250	water channel activity	IEP	HCCA
CC	GO:0016324	apical plasma membrane	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0022622	root system development	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0040034	regulation of development, heterochronic	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0045926	negative regulation of growth	IEP	HCCA
BP	GO:0046620	regulation of organ growth	IEP	HCCA
BP	GO:0046621	negative regulation of organ growth	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048442	sepal development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0048479	style development	IEP	HCCA
BP	GO:0048480	stigma development	IEP	HCCA
BP	GO:0048498	establishment of petal orientation	IEP	HCCA
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	HCCA
BP	GO:0048509	regulation of meristem development	IEP	HCCA
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	HCCA
BP	GO:0048559	establishment of floral organ orientation	IEP	HCCA
BP	GO:0048560	establishment of anatomical structure orientation	IEP	HCCA
BP	GO:0048640	negative regulation of developmental growth	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090428	perianth development	IEP	HCCA
BP	GO:0090558	plant epidermis development	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0090707	establishment of plant organ orientation	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098590	plasma membrane region	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

No InterPro domains available for this sequence

External Links

PLAZA 3.0 Dicots	AT5G66350

AT5G66350

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation