AT5G67380

Description : casein kinase alpha 1

Gene families : OG_01_0001973 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001973_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G67380
Cluster	HCCA: Cluster_217

Target	Alias	Description	ECC score	Gene Family Method	Actions
Zci_00136.1	No alias	catalytic subunit alpha of CK-II protein kinase	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004674	protein serine/threonine kinase activity	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IDA	Interproscan
BP	GO:0006325	chromatin organization	IDA	Interproscan
BP	GO:0006325	chromatin organization	IEP	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0007623	circadian rhythm	IGI	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010212	response to ionizing radiation	None	Extended
BP	GO:0010225	response to UV-C	IMP	Interproscan
BP	GO:0010332	response to gamma radiation	IMP	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016301	kinase activity	IDA	Interproscan
MF	GO:0016301	kinase activity	ISS	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048573	photoperiodism, flowering	RCA	Interproscan
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	IEP	Interproscan
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	Interproscan

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
CC	GO:0000322	storage vacuole	IEP	HCCA
CC	GO:0000326	protein storage vacuole	IEP	HCCA
CC	GO:0000775	chromosome, centromeric region	IEP	HCCA
CC	GO:0000785	chromatin	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0001735	prenylcysteine oxidase activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005770	late endosome	IEP	HCCA
CC	GO:0005771	multivesicular body	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
CC	GO:0005956	protein kinase CK2 complex	IEP	HCCA
CC	GO:0005963	magnesium-dependent protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006892	post-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006896	Golgi to vacuole transport	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0007041	lysosomal transport	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
BP	GO:0008333	endosome to lysosome transport	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009745	sucrose mediated signaling	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009958	positive gravitropism	IEP	HCCA
BP	GO:0010019	chloroplast-nucleus signaling pathway	IEP	HCCA
BP	GO:0010187	negative regulation of seed germination	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
BP	GO:0010359	regulation of anion channel activity	IEP	HCCA
BP	GO:0010380	regulation of chlorophyll biosynthetic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
CC	GO:0016021	integral component of membrane	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016670	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	HCCA
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0030327	prenylated protein catabolic process	IEP	HCCA
CC	GO:0030904	retromer complex	IEP	HCCA
BP	GO:0031048	heterochromatin assembly by small RNA	IEP	HCCA
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0031507	heterochromatin assembly	IEP	HCCA
BP	GO:0032409	regulation of transporter activity	IEP	HCCA
BP	GO:0032412	regulation of ion transmembrane transporter activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0040029	regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0044070	regulation of anion transport	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0045338	farnesyl diphosphate metabolic process	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
BP	GO:0090056	regulation of chlorophyll metabolic process	IEP	HCCA
CC	GO:0098687	chromosomal region	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
BP	GO:1901401	regulation of tetrapyrrole metabolic process	IEP	HCCA
BP	GO:1901402	negative regulation of tetrapyrrole metabolic process	IEP	HCCA
BP	GO:1901463	regulation of tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:1901464	negative regulation of tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:1902325	negative regulation of chlorophyll biosynthetic process	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA
BP	GO:1903959	regulation of anion transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000719	Prot_kinase_dom	110	395

External Links

PLAZA 3.0 Dicots	AT5G67380

AT5G67380

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation