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  5. Cre01.g024200

Cre01.g024200


Description : RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF64/Rna15 component


Gene families : OG_01_0007274 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007274_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g024200
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Mp4g14470.1 No alias component CstF64/Rna15 of Cleavage Stimulatory Factor... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_13370V3.1 No alias cleavage stimulating factor 64 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04627.1 No alias component CstF64/Rna15 of Cleavage Stimulatory Factor... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0031124 mRNA 3'-end processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription, initiation IEP HCCA
BP GO:0006354 DNA-templated transcription, elongation IEP HCCA
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019107 myristoyltransferase activity IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 78
IPR026896 CSTF_C 348 383
IPR025742 CSTF2_hinge 147 208
No external refs found!