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  5. Cre01.g039900

Cre01.g039900


Description : RNA processing.ribonuclease activities.RNase Z endoribonuclease


Gene families : OG_01_0004132 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004132_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g039900
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Pp3c14_3370V3.1 No alias tRNAse Z4 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_07548.1 No alias endoribonuclease (RNase Z) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008987 quinolinate synthetase A activity IEP HCCA
BP GO:0009435 NAD biosynthetic process IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 816 895
IPR027794 tRNase_Z_dom 57 106
No external refs found!