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  5. Cre01.g063997

Cre01.g063997


Description : Polyadenylate-binding protein-interacting protein 3 OS=Arabidopsis thaliana


Gene families : OG_01_0003422 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003422_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g063997
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AT1G54170 No alias CTC-interacting domain 3 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g15450.1 No alias Polyadenylate-binding protein-interacting protein 4... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP HCCA
MF GO:0000340 RNA 7-methylguanosine cap binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025852 SM_dom_ATX 51 133
IPR009604 LsmAD_domain 204 275
No external refs found!