AT1G30330

Description : auxin response factor 6

Gene families : OG_01_0000290 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000290_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G30330
Cluster	HCCA: Cluster_115

Type	GO Term	Name	Evidence	Source
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IMP	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	RCA	Interproscan
BP	GO:0009886	post-embryonic animal morphogenesis	RCA	Interproscan
BP	GO:0009887	animal organ morphogenesis	RCA	Interproscan
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009908	flower development	IGI	Interproscan
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0010014	meristem initiation	RCA	Interproscan
BP	GO:0010016	shoot system morphogenesis	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	RCA	Interproscan
BP	GO:0010073	meristem maintenance	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048439	flower morphogenesis	RCA	Interproscan
BP	GO:0048481	plant ovule development	RCA	Interproscan
BP	GO:0048507	meristem development	RCA	Interproscan
BP	GO:0048519	negative regulation of biological process	RCA	Interproscan
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0003978	UDP-glucose 4-epimerase activity	IEP	HCCA
MF	GO:0004108	citrate (Si)-synthase activity	IEP	HCCA
MF	GO:0004532	exoribonuclease activity	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004805	trehalose-phosphatase activity	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
BP	GO:0006152	purine nucleoside catabolic process	IEP	HCCA
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	HCCA
BP	GO:0006218	uridine catabolic process	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0007020	microtubule nucleation	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008477	purine nucleosidase activity	IEP	HCCA
MF	GO:0008559	ABC-type xenobiotic transporter activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009164	nucleoside catabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0009408	response to heat	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009627	systemic acquired resistance	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009658	chloroplast organization	IEP	HCCA
BP	GO:0009737	response to abscisic acid	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009873	ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0010187	negative regulation of seed germination	IEP	HCCA
BP	GO:0010286	heat acclimation	IEP	HCCA
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
BP	GO:0015074	DNA integration	IEP	HCCA
MF	GO:0015086 GO:0016192	cadmium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015446	ATPase-coupled arsenite transmembrane transporter activity	IEP	HCCA
BP	GO:0015691	cadmium ion transport	IEP	HCCA
BP	GO:0015700	arsenite transport	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
BP	GO:0016145	S-glycoside catabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0019172	glyoxalase III activity	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
BP	GO:0019759	glycosinolate catabolic process	IEP	HCCA
BP	GO:0019762	glucosinolate catabolic process	IEP	HCCA
CC	GO:0030126	COPI vesicle coat	IEP	HCCA
BP	GO:0031348	negative regulation of defense response	IEP	HCCA
BP	GO:0031647	regulation of protein stability	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	HCCA
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0036440	citrate synthase activity	IEP	HCCA
BP	GO:0042278	purine nucleoside metabolic process	IEP	HCCA
BP	GO:0042343	indole glucosinolate metabolic process	IEP	HCCA
BP	GO:0042344	indole glucosinolate catabolic process	IEP	HCCA
BP	GO:0042454	ribonucleoside catabolic process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	HCCA
BP	GO:0042946	glucoside transport	IEP	HCCA
MF	GO:0042947	glucoside transmembrane transporter activity	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
MF	GO:0045437	uridine nucleosidase activity	IEP	HCCA
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEP	HCCA
BP	GO:0046108	uridine metabolic process	IEP	HCCA
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	HCCA
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	HCCA
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
MF	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer	IEP	HCCA
MF	GO:0047622	adenosine nucleosidase activity	IEP	HCCA
MF	GO:0047681	aryl-alcohol dehydrogenase (NADP+) activity	IEP	HCCA
MF	GO:0047724	inosine nucleosidase activity	IEP	HCCA
MF	GO:0050263	ribosylpyrimidine nucleosidase activity	IEP	HCCA
MF	GO:0050373	UDP-arabinose 4-epimerase activity	IEP	HCCA
BP	GO:0050821	protein stabilization	IEP	HCCA
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0052482	defense response by cell wall thickening	IEP	HCCA
BP	GO:0052544	defense response by callose deposition in cell wall	IEP	HCCA
BP	GO:0061416	obsolete regulation of transcription from RNA polymerase II promoter in response to salt stress	IEP	HCCA
MF	GO:0070063	RNA polymerase binding	IEP	HCCA
BP	GO:0071365	cellular response to auxin stimulus	IEP	HCCA
BP	GO:0071366	cellular response to indolebutyric acid stimulus	IEP	HCCA
BP	GO:0071407	cellular response to organic cyclic compound	IEP	HCCA
BP	GO:0071417	cellular response to organonitrogen compound	IEP	HCCA
BP	GO:0072523	purine-containing compound catabolic process	IEP	HCCA
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	HCCA
MF	GO:0072585	xanthosine nucleotidase activity	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
BP	GO:0080026	response to indolebutyric acid	IEP	HCCA
BP	GO:0090332	stomatal closure	IEP	HCCA
BP	GO:0097305	response to alcohol	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901656	glycoside transport	IEP	HCCA
BP	GO:1901658	glycosyl compound catabolic process	IEP	HCCA
MF	GO:1901683	arsenate ion transmembrane transporter activity	IEP	HCCA
MF	GO:1902417	(+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	IEP	HCCA
BP	GO:1902418	(+)-abscisic acid D-glucopyranosyl ester transmembrane transport	IEP	HCCA
BP	GO:1905428	regulation of plant organ formation	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
BP	GO:2000025	regulation of leaf formation	IEP	HCCA
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	127	228
IPR010525	ARF_dom	253	336
IPR033389	AUX/IAA_dom	782	883

External Links

PLAZA 3.0 Dicots	AT1G30330

AT1G30330

Expression Profile

Co-expression Networks

Functional Annotation