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AT1G30730


Description : FAD-binding Berberine family protein


Gene families : OG_01_0000138 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G30730
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
AT1G26380 No alias FAD-binding Berberine family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G26410 No alias FAD-binding Berberine family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G26420 No alias FAD-binding Berberine family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G20820 No alias FAD-binding Berberine family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44380 No alias FAD-binding Berberine family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44400 No alias FAD-binding Berberine family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44440 No alias FAD-binding Berberine family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
MF GO:0009055 electron transfer activity ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016656 monodehydroascorbate reductase (NADH) activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0036294 cellular response to decreased oxygen levels IEP HCCA
BP GO:0042343 indole glucosinolate metabolic process IEP HCCA
BP GO:0071453 cellular response to oxygen levels IEP HCCA
BP GO:0071456 cellular response to hypoxia IEP HCCA
InterPro domains Description Start Stop
IPR006094 Oxid_FAD_bind_N 76 211
IPR012951 BBE 468 523
PLAZA 3.0 Dicots AT1G30730