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  5. Cre03.g180850

Cre03.g180850


Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec23 component


Gene families : OG_01_0001544 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001544_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g180850
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AT3G23660 No alias Sec23/Sec24 protein transport family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G14160 No alias Sec23/Sec24 protein transport family protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G43670 No alias Sec23/Sec24 protein transport family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g12190.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0005047 signal recognition particle binding IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
CC GO:0005785 signal recognition particle receptor complex IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP HCCA
CC GO:0016021 integral component of membrane IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR012990 Sec23_24_beta_S 402 506
IPR006896 Sec23/24_trunk_dom 120 389
IPR006900 Sec23/24_helical_dom 520 617
IPR006895 Znf_Sec23_Sec24 53 91
IPR007123 Gelsolin-like_dom 634 720
No external refs found!