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  5. Cre04.g217921

Cre04.g217921


Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.beta subunit


Gene families : OG_01_0004223 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre04.g217921
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT4G31480 No alias Coatomer, beta subunit 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G31490 No alias Coatomer, beta subunit 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp5g08450.1 No alias subunit beta of cargo adaptor F-subcomplex 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_8430V3.1 No alias Coatomer, beta subunit 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_02685.1 No alias subunit beta of cargo adaptor F-subcomplex 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0016021 integral component of membrane IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046854 phosphatidylinositol phosphate biosynthetic process IEP HCCA
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR011710 Coatomer_bsu_C 676 814
IPR002553 Clathrin/coatomer_adapt-like_N 18 470
IPR029446 COPB1_appendage_platform_dom 820 953
No external refs found!