AT1G32360

Description : Zinc finger (CCCH-type) family protein

Gene families : OG_01_0001620 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001620_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G32360
Cluster	HCCA: Cluster_213

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cre11.g476200	No alias	No description available	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
MF	GO:0003993	acid phosphatase activity	IEP	HCCA
MF	GO:0004022	alcohol dehydrogenase (NAD+) activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0005244	voltage-gated ion channel activity	IEP	HCCA
MF	GO:0005249	voltage-gated potassium channel activity	IEP	HCCA
MF	GO:0005267	potassium channel activity	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005673	transcription factor TFIIE complex	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006560	proline metabolic process	IEP	HCCA
BP	GO:0006561	proline biosynthetic process	IEP	HCCA
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	HCCA
BP	GO:0006811	ion transport	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
CC	GO:0008076	voltage-gated potassium channel complex	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009408	response to heat	IEP	HCCA
CC	GO:0009527	plastid outer membrane	IEP	HCCA
BP	GO:0009687	abscisic acid metabolic process	IEP	HCCA
BP	GO:0009688	abscisic acid biosynthetic process	IEP	HCCA
CC	GO:0009707	chloroplast outer membrane	IEP	HCCA
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0010030	positive regulation of seed germination	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010098	suspensor development	IEP	HCCA
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IEP	HCCA
MF	GO:0010301	xanthoxin dehydrogenase activity	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	HCCA
MF	GO:0015075	ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015112	nitrate transmembrane transporter activity	IEP	HCCA
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	HCCA
CC	GO:0016602	CCAAT-binding factor complex	IEP	HCCA
MF	GO:0018455	alcohol dehydrogenase [NAD(P)+] activity	IEP	HCCA
BP	GO:0019216	regulation of lipid metabolic process	IEP	HCCA
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022843	voltage-gated cation channel activity	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
CC	GO:0034702	ion channel complex	IEP	HCCA
CC	GO:0034703	cation channel complex	IEP	HCCA
CC	GO:0034705	potassium channel complex	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0043288	apocarotenoid metabolic process	IEP	HCCA
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
BP	GO:0043455	regulation of secondary metabolic process	IEP	HCCA
BP	GO:0043562	cellular response to nitrogen levels	IEP	HCCA
BP	GO:0045892	negative regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	HCCA
BP	GO:0048316	seed development	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
BP	GO:0080050	regulation of seed development	IEP	HCCA
MF	GO:0080054	low-affinity nitrate transmembrane transporter activity	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1902644	tertiary alcohol metabolic process	IEP	HCCA
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2000034	regulation of seed maturation	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	261	286
IPR000571	Znf_CCCH	92	115

External Links

PLAZA 3.0 Dicots	AT1G32360

AT1G32360

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation