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  5. Cre06.g272950

Cre06.g272950


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS18 component


Gene families : OG_01_0000828 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000828_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g272950
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AT1G22780 No alias Ribosomal protein S13/S18 family 0.24 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G34030 No alias Ribosomal protein S13/S18 family 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G09800 No alias S18 ribosomal protein 0.29 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g07420.1 No alias component RPS18 of SSU proteome 0.47 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp5g02820.1 No alias component RPS18 of SSU proteome 0.45 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_2090V3.1 No alias Ribosomal protein S13/S18 family 0.48 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_1240V3.1 No alias Ribosomal protein S13/S18 family 0.39 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_1430V3.1 No alias Ribosomal protein S13/S18 family 0.54 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_2800V3.1 No alias Ribosomal protein S13/S18 family 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_21770V3.1 No alias Ribosomal protein S13/S18 family 0.44 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_21830V3.1 No alias Ribosomal protein S13/S18 family 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_08045.2 No alias component uS13 of SSU proteome 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 15 142
No external refs found!