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AT1G33980


Description : Smg-4/UPF3 family protein


Gene families : OG_01_0002215 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G33980
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
Pp3c12_4230V3.1 No alias Smg-4/UPF3 family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04962.3 No alias component UPF3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IMP Interproscan
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IGI Interproscan
BP GO:0000956 nuclear-transcribed mRNA catabolic process RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
BP GO:0042742 defense response to bacterium IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000785 chromatin IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006266 DNA ligation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009911 positive regulation of flower development IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048582 positive regulation of post-embryonic development IEP HCCA
BP GO:0048645 animal organ formation IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
MF GO:0070063 RNA polymerase binding IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR005120 UPF3_dom 6 168
PLAZA 3.0 Dicots AT1G33980