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  5. Cre07.g345050

Cre07.g345050


Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG_01_0000614 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g345050
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AT1G53160 No alias squamosa promoter binding protein-like 4 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G69170 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G15270 No alias squamosa promoter binding protein-like 5 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G43270 No alias squamosa promoter binding protein-like 2 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR004333 SBP_dom 206 279
No external refs found!