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  5. Cre07.g348850

Cre07.g348850


Description : 50S ribosomal protein L2, chloroplastic OS=Chara vulgaris


Gene families : OG_01_0001853 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g348850
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
ATCG00830 No alias ribosomal protein L2 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
ATCG01310 No alias ribosomal protein L2 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g19370.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_23491V3.1 No alias Ribosomal protein L2 family 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_07534.1 No alias no annotation 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000314 organellar small ribosomal subunit IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005763 mitochondrial small ribosomal subunit IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008324 cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR022666 Rbsml_prot_L2_RNA-bd_dom 115 195
IPR022669 Ribosomal_L2_C 203 325
No external refs found!