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  5. Cre08.g377200

Cre08.g377200


Description : CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana


Gene families : OG_01_0002062 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002062_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre08.g377200
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AT2G25170 No alias chromatin remodeling factor CHD3 (PICKLE) 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04520.2 No alias CHD3-type chromatin remodeling factor (PKL/PKR) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 641 705
IPR023780 Chromo_domain 367 412
IPR023780 Chromo_domain 456 544
IPR001650 Helicase_C 922 1028
IPR009462 DUF1086 1457 1574
IPR019787 Znf_PHD-finger 272 323
IPR000330 SNF2_N 732 887
No external refs found!