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AT1G43190


Description : polypyrimidine tract-binding protein 3


Gene families : OG_01_0005894 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G43190
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Pp3c14_14100V3.1 No alias polypyrimidine tract-binding protein 3 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0000932 P-body IDA Interproscan
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0006417 regulation of translation IEP Interproscan
BP GO:0043484 regulation of RNA splicing IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0001934 positive regulation of protein phosphorylation IEP HCCA
BP GO:0002376 immune system process IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004676 3-phosphoinositide-dependent protein kinase activity IEP HCCA
MF GO:0004843 thiol-dependent deubiquitinase IEP HCCA
MF GO:0004845 uracil phosphoribosyltransferase activity IEP HCCA
MF GO:0004849 uridine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005697 telomerase holoenzyme complex IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006109 regulation of carbohydrate metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006222 UMP biosynthetic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008242 omega peptidase activity IEP HCCA
BP GO:0008655 pyrimidine-containing compound salvage IEP HCCA
MF GO:0008676 3-deoxy-8-phosphooctulonate synthase activity IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009129 pyrimidine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009174 pyrimidine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009432 SOS response IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010138 pyrimidine ribonucleotide salvage IEP HCCA
BP GO:0010306 rhamnogalacturonan II biosynthetic process IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010393 galacturonan metabolic process IEP HCCA
BP GO:0010396 rhamnogalacturonan II metabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010562 positive regulation of phosphorus metabolic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010675 regulation of cellular carbohydrate metabolic process IEP HCCA
MF GO:0015562 efflux transmembrane transporter activity IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019211 phosphatase activator activity IEP HCCA
BP GO:0019294 keto-3-deoxy-D-manno-octulosonic acid biosynthetic process IEP HCCA
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032206 positive regulation of telomere maintenance IEP HCCA
BP GO:0032210 regulation of telomere maintenance via telomerase IEP HCCA
BP GO:0032212 positive regulation of telomere maintenance via telomerase IEP HCCA
BP GO:0032262 pyrimidine nucleotide salvage IEP HCCA
BP GO:0032270 positive regulation of cellular protein metabolic process IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0032881 regulation of polysaccharide metabolic process IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033674 positive regulation of kinase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042162 telomeric DNA binding IEP HCCA
BP GO:0042325 regulation of phosphorylation IEP HCCA
BP GO:0042327 positive regulation of phosphorylation IEP HCCA
MF GO:0043047 single-stranded telomeric DNA binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043173 nucleotide salvage IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044206 UMP salvage IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045488 pectin metabolic process IEP HCCA
BP GO:0045489 pectin biosynthetic process IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0045860 positive regulation of protein kinase activity IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045937 positive regulation of phosphate metabolic process IEP HCCA
BP GO:0046049 UMP metabolic process IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046400 keto-3-deoxy-D-manno-octulosonic acid metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051054 positive regulation of DNA metabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051347 positive regulation of transferase activity IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0052325 cell wall pectin biosynthetic process IEP HCCA
BP GO:0052546 cell wall pectin metabolic process IEP HCCA
MF GO:0070300 phosphatidic acid binding IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090329 regulation of DNA-dependent DNA replication IEP HCCA
MF GO:0098847 sequence-specific single stranded DNA binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1904356 regulation of telomere maintenance via telomere lengthening IEP HCCA
BP GO:1904358 positive regulation of telomere maintenance via telomere lengthening IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2000278 regulation of DNA biosynthetic process IEP HCCA
BP GO:2000573 positive regulation of DNA biosynthetic process IEP HCCA
BP GO:2000904 regulation of starch metabolic process IEP HCCA
BP GO:2001252 positive regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 59
IPR000504 RRM_dom 360 422
IPR021790 PTBP1_RRM 98 175
PLAZA 3.0 Dicots AT1G43190