Cre09.g403300

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIh basal transcription factor complex.TFB2-type subunit

Gene families : OG_01_0006003 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006003_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre09.g403300
Cluster	HCCA: Cluster_148

Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	IEA	Interproscan
MF	GO:0001671	ATPase activator activity	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:0140677	molecular function activator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004843	thiol-dependent deubiquitinase	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
MF	GO:0008242	omega peptidase activity	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
MF	GO:0070403	NAD+ binding	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004598	TFIIH_p52/Tfb2	6	468

External Links

No external refs found!

Cre09.g403300

Expression Profile

Co-expression Networks

Functional Annotation