Cre09.g408200

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.RSZ21/22 splicing factor

Gene families : OG_01_0001371 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001371_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre09.g408200
Cluster	HCCA: Cluster_128

Target	Alias	Description	ECC score	Gene Family Method
AT1G23860	No alias	RS-containing zinc finger protein 21	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G24590	No alias	RNA recognition motif and CCHC-type zinc finger domains...	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G31580	No alias	serine/arginine-rich 22	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_5100V3.1	No alias	serine/arginine-rich 22	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_15987.1	No alias	RNA splicing factor (RSZ21/22)	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	5	62
IPR001878	Znf_CCHC	103	118

External Links

No external refs found!