1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G04610

AT1G04610


Description : YUCCA 3


Gene families : OG_01_0000294 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G04610
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Pp3c3_18590V3.1 No alias Flavin-binding monooxygenase family protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009851 auxin biosynthetic process IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000303 response to superoxide IEP HCCA
BP GO:0000305 response to oxygen radical IEP HCCA
BP GO:0000354 cis assembly of pre-catalytic spliceosome IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000578 embryonic axis specification IEP HCCA
CC GO:0000813 ESCRT I complex IEP HCCA
BP GO:0001709 cell fate determination IEP HCCA
BP GO:0002252 immune effector process IEP HCCA
BP GO:0002679 respiratory burst involved in defense response IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003997 acyl-CoA oxidase activity IEP HCCA
MF GO:0004034 aldose 1-epimerase activity IEP HCCA
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP HCCA
MF GO:0004708 MAP kinase kinase activity IEP HCCA
MF GO:0005354 galactose transmembrane transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005686 U2 snRNP IEP HCCA
CC GO:0005740 mitochondrial envelope IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008327 methyl-CpG binding IEP HCCA
BP GO:0009403 toxin biosynthetic process IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009700 indole phytoalexin biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009723 response to ethylene IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0009739 response to gibberellin IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009873 ethylene-activated signaling pathway IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0010120 camalexin biosynthetic process IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010200 response to chitin IEP HCCA
BP GO:0010243 response to organonitrogen compound IEP HCCA
BP GO:0010262 somatic embryogenesis IEP HCCA
CC GO:0010369 chromocenter IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0015030 Cajal body IEP HCCA
MF GO:0015145 monosaccharide transmembrane transporter activity IEP HCCA
MF GO:0015149 hexose transmembrane transporter activity IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0019209 kinase activator activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0030295 protein kinase activator activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0031099 regeneration IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
BP GO:0045730 respiratory burst IEP HCCA
BP GO:0045893 positive regulation of transcription, DNA-templated IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046217 indole phytoalexin metabolic process IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0052314 phytoalexin metabolic process IEP HCCA
BP GO:0052315 phytoalexin biosynthetic process IEP HCCA
BP GO:0052317 camalexin metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
MF GO:0080025 phosphatidylinositol-3,5-bisphosphate binding IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR020946 Flavin_mOase-like 39 358
PLAZA 3.0 Dicots AT1G04610