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  5. Cre10.g433550

Cre10.g433550


Description : DNA damage response.DNA repair mechanisms.nonhomologous end-joining repair (NHEJ).LIG4-XRCC4 ligase complex.LIG4 DNA ligase component


Gene families : OG_01_0006704 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006704_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g433550
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
Mp1g17990.1 No alias DNA ligase component LIG4 of LIG4-XRCC4 ligase complex 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0001733 galactosylceramide sulfotransferase activity IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
MF GO:0050694 galactose 3-O-sulfotransferase activity IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR012308 DNA_ligase_ATP-dep_N 38 243
IPR012310 DNA_ligase_ATP-dep_cent 283 337
IPR012310 DNA_ligase_ATP-dep_cent 384 563
IPR012309 DNA_ligase_ATP-dep_C 587 706
No external refs found!