AT1G47720

Description : Primosome PriB/single-strand DNA-binding

Gene families : OG_01_0000977 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000977_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G47720
Cluster	HCCA: Cluster_176

Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IMP	Interproscan
BP	GO:0000018	regulation of DNA recombination	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007005	mitochondrion organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	RCA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0045910	negative regulation of DNA recombination	IMP	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051053	negative regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000162	tryptophan biosynthetic process	IEP	HCCA
MF	GO:0000182	rDNA binding	IEP	HCCA
MF	GO:0000213	tRNA-intron endonuclease activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	HCCA
MF	GO:0004640	phosphoribosylanthranilate isomerase activity	IEP	HCCA
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	HCCA
MF	GO:0004815	aspartate-tRNA ligase activity	IEP	HCCA
MF	GO:0004843	thiol-dependent deubiquitinase	IEP	HCCA
MF	GO:0004930	G protein-coupled receptor activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin assembly	IEP	HCCA
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006558	L-phenylalanine metabolic process	IEP	HCCA
BP	GO:0006570	tyrosine metabolic process	IEP	HCCA
BP	GO:0006571	tyrosine biosynthetic process	IEP	HCCA
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	HCCA
BP	GO:0006596	polyamine biosynthetic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006935	chemotaxis	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007202	activation of phospholipase C activity	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0007276	gamete generation	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0008216	spermidine metabolic process	IEP	HCCA
BP	GO:0008295	spermidine biosynthetic process	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	HCCA
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	HCCA
BP	GO:0009309	amine biosynthetic process	IEP	HCCA
BP	GO:0009452	7-methylguanosine RNA capping	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009645	response to low light intensity stimulus	IEP	HCCA
BP	GO:0009785	blue light signaling pathway	IEP	HCCA
BP	GO:0009875	pollen-pistil interaction	IEP	HCCA
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009939	positive regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0010183	pollen tube guidance	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010231	maintenance of seed dormancy	IEP	HCCA
BP	GO:0010244	response to low fluence blue light stimulus by blue low-fluence system	IEP	HCCA
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	HCCA
BP	GO:0010517	regulation of phospholipase activity	IEP	HCCA
BP	GO:0010518	positive regulation of phospholipase activity	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0010863	positive regulation of phospholipase C activity	IEP	HCCA
BP	GO:0010919	regulation of inositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	HCCA
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	HCCA
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	HCCA
BP	GO:0019478	D-amino acid catabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0030522	intracellular receptor signaling pathway	IEP	HCCA
BP	GO:0031047	gene silencing by RNA	IEP	HCCA
BP	GO:0031507	heterochromatin assembly	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032877	positive regulation of DNA endoreduplication	IEP	HCCA
BP	GO:0032960	regulation of inositol trisphosphate biosynthetic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0036260	RNA capping	IEP	HCCA
BP	GO:0040011	locomotion	IEP	HCCA
BP	GO:0040029	regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0042330	taxis	IEP	HCCA
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044106	cellular amine metabolic process	IEP	HCCA
CC	GO:0044214	spanning component of plasma membrane	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0045740	positive regulation of DNA replication	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0046219	indolalkylamine biosynthetic process	IEP	HCCA
BP	GO:0046416	D-amino acid metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0050918	positive chemotaxis	IEP	HCCA
BP	GO:0051336	regulation of hydrolase activity	IEP	HCCA
BP	GO:0051345	positive regulation of hydrolase activity	IEP	HCCA
BP	GO:0060191	regulation of lipase activity	IEP	HCCA
BP	GO:0060193	positive regulation of lipase activity	IEP	HCCA
MF	GO:0070566	adenylyltransferase activity	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0071483	cellular response to blue light	IEP	HCCA
MF	GO:0080084	5S rDNA binding	IEP	HCCA
CC	GO:0089717	spanning component of membrane	IEP	HCCA
BP	GO:0090068	positive regulation of cell cycle process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097437	maintenance of dormancy	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1900274	regulation of phospholipase C activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	HCCA
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	HCCA
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	HCCA
BP	GO:2000105	positive regulation of DNA-dependent DNA replication	IEP	HCCA

No InterPro domains available for this sequence

External Links

PLAZA 3.0 Dicots	AT1G47720

AT1G47720

Expression Profile

Co-expression Networks

Functional Annotation