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AT1G48310


Description : chromatin remodeling factor18


Gene families : OG_01_0003511 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G48310
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Pp3c16_16990V3.1 No alias chromatin remodeling factor18 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0004386 helicase activity ISS Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000018 regulation of DNA recombination IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0005834 heterotrimeric G-protein complex IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
BP GO:0009566 fertilization IEP HCCA
BP GO:0009567 double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010183 pollen tube guidance IEP HCCA
BP GO:0010520 regulation of reciprocal meiotic recombination IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0040020 regulation of meiotic nuclear division IEP HCCA
BP GO:0042330 taxis IEP HCCA
BP GO:0045128 negative regulation of reciprocal meiotic recombination IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045835 negative regulation of meiotic nuclear division IEP HCCA
BP GO:0045910 negative regulation of DNA recombination IEP HCCA
BP GO:0048235 pollen sperm cell differentiation IEP HCCA
BP GO:0050918 positive chemotaxis IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051445 regulation of meiotic cell cycle IEP HCCA
BP GO:0051447 negative regulation of meiotic cell cycle IEP HCCA
BP GO:0051783 regulation of nuclear division IEP HCCA
BP GO:0051784 negative regulation of nuclear division IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905360 GTPase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 475 581
IPR000330 SNF2_N 191 427
PLAZA 3.0 Dicots AT1G48310