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Description : Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana
Gene families : OG_01_0003164 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003164_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre12.g491150 | |
| Cluster | HCCA: Cluster_67 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Mp4g23290.1 | No alias | Vacuolar protein sorting-associated protein 55 homolog... | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c16_810V3.1 | No alias | Vacuolar protein sorting 55 (VPS55) family protein | 0.01 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c6_13440V3.1 | No alias | Vacuolar protein sorting 55 (VPS55) family protein | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_04861.1 | No alias | no annotation | 0.01 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000814 | ESCRT II complex | IEP | HCCA |
| MF | GO:0003682 | chromatin binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| CC | GO:0005622 | intracellular anatomical structure | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| CC | GO:0005672 | transcription factor TFIIA complex | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | HCCA |
| BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
| BP | GO:0007034 | vacuolar transport | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| CC | GO:0030008 | TRAPP complex | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0036452 | ESCRT complex | IEP | HCCA |
| MF | GO:0042393 | histone binding | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | cellular amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| BP | GO:0071985 | multivesicular body sorting pathway | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| CC | GO:0099023 | vesicle tethering complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007262 | Vps55/LEPROT | 9 | 127 |
| No external refs found! |