Cre12.g498250

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS17 component

Gene families : OG_01_0000978 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000978_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g498250
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT2G04390	No alias	Ribosomal S17 family protein	0.11	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05220	No alias	Ribosomal S17 family protein	0.23	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci	Cytoscape.js
AT3G10610	No alias	Ribosomal S17 family protein	0.27	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G04800	No alias	Ribosomal S17 family protein	0.2	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g18950.1	No alias	component RPS17 of SSU proteome	0.43	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_2530V3.1	No alias	Ribosomal S17 family protein	0.3	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_2540V3.1	No alias	Ribosomal S17 family protein	0.35	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_34780V3.1	No alias	Ribosomal S17 family protein	0.3	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_21070V3.1	No alias	Ribosomal S17 family protein	0.11	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_21140V3.1	No alias	Ribosomal S17 family protein	0.33	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_11938.1	No alias	component eS17 of SSU proteome	0.18	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
CC	GO:0030964	NADH dehydrogenase complex	IEP	HCCA
CC	GO:0045271	respiratory chain complex I	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
CC	GO:1902495	transmembrane transporter complex	IEP	HCCA
CC	GO:1990351	transporter complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001210	Ribosomal_S17e	1	121

External Links

No external refs found!

Cre12.g498250

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation