Cre12.g504550

Description : Chromatin organisation.histones.H2B-type histone

Gene families : OG_01_0000046 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g504550
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
AT1G07790	No alias	Histone superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45980	No alias	Histone superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G46030	No alias	Histone superfamily protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22880	No alias	histone B2	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G59910	No alias	Histone superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g13450.1	No alias	histone (H2B)	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g04070.1	No alias	histone (H2B)	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g07010.1	No alias	histone (H2B)	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_7610V3.1	No alias	Histone superfamily protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_23540V3.1	No alias	Histone superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_15780V3.1	No alias	Histone superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_15800V3.1	No alias	Histone superfamily protein	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0004427	inorganic diphosphatase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	4	128

External Links

No external refs found!