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  5. Cre12.g506250

Cre12.g506250


Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG_01_0000053 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000053_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g506250
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AT1G08880 No alias Histone superfamily protein 0.57 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G51060 No alias histone H2A 10 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G54690 No alias gamma histone variant H2AX 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G20670 No alias histone H2A 13 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G27230 No alias histone H2A 2 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G27670 No alias histone H2A 7 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G59870 No alias histone H2A 6 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.25 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.29 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g00760.1 No alias histone (H2A) 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g00840.1 No alias histone (H2A) 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g02370.1 No alias histone (H2A) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_1791V3.1 No alias histone H2A 10 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_1800V3.1 No alias histone H2A 10 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_29410V3.1 No alias histone H2A 10 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_03481.1 No alias histone (H2A) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_06876.1 No alias histone (H2A) 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 9 88
IPR032454 Histone_H2A_C 91 124
No external refs found!