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  5. Cre12.g507700

Cre12.g507700


Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component


Gene families : OG_01_0004768 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004768_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g507700
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
Mp1g20320.1 No alias component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_17570V3.1 No alias THO2 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_06637.2 No alias component THOC2/Tho2 of mRNP trafficking THO subcomplex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR032302 THOC2_N 38 268
IPR032302 THOC2_N 498 668
IPR021418 THO_THOC2_C 1064 1187
IPR021418 THO_THOC2_C 1264 1444
IPR021726 THO_THOC2_N 688 762
No external refs found!