Cre12.g510450

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS28 component

Gene families : OG_01_0001614 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001614_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g510450
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method
AT3G10090	No alias	Nucleic acid-binding, OB-fold-like protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G03850	No alias	Nucleic acid-binding, OB-fold-like protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G64140	No alias	ribosomal protein S28	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g15160.1	No alias	component RPS28 of SSU proteome	0.29	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_19610V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.33	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_13300V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.25	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_28770V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.3	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_6000V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_27040V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0019843	rRNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000289	Ribosomal_S28e	1	54

External Links

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Cre12.g510450

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation