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  5. Cre12.g514250

Cre12.g514250


Description : RNA biosynthesis.transcriptional activation.JUMONJI transcription factor


Gene families : OG_01_0000306 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g514250
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT2G38950 No alias Transcription factor jumonji (jmj) family protein / zinc... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_10100V3.1 No alias JUMONJI 14 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004520 endodeoxyribonuclease activity IEP HCCA
MF GO:0004531 deoxyribonuclease II activity IEP HCCA
MF GO:0004536 deoxyribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0043624 cellular protein complex disassembly IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 686 733
IPR001606 ARID_dom 80 166
IPR003349 JmjN 9 42
IPR013637 Lys_sp_deMease-like_dom 1558 1939
IPR004198 Znf_C5HC2 1158 1209
IPR003347 JmjC_dom 898 984
No external refs found!