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Description : BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G04770.1); Has 40 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Gene families : OG_01_0000931 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000931_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT1G49940 | |
| Cluster | HCCA: Cluster_240 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Mp3g16860.1 | No alias | meiotic exit regulator (MS5/TDM1) | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| CC | GO:0009507 | chloroplast | ISM | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0003002 | regionalization | IEP | HCCA |
| MF | GO:0003725 | double-stranded RNA binding | IEP | HCCA |
| MF | GO:0004871 | obsolete signal transducer activity | IEP | HCCA |
| MF | GO:0005253 | anion channel activity | IEP | HCCA |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | HCCA |
| CC | GO:0005834 | heterotrimeric G-protein complex | IEP | HCCA |
| BP | GO:0006360 | transcription by RNA polymerase I | IEP | HCCA |
| BP | GO:0007276 | gamete generation | IEP | HCCA |
| MF | GO:0008308 | voltage-gated anion channel activity | IEP | HCCA |
| BP | GO:0009615 | response to virus | IEP | HCCA |
| BP | GO:0009845 | seed germination | IEP | HCCA |
| BP | GO:0009965 | leaf morphogenesis | IEP | HCCA |
| BP | GO:0010267 | production of ta-siRNAs involved in RNA interference | IEP | HCCA |
| BP | GO:0016569 | obsolete covalent chromatin modification | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| BP | GO:0030422 | production of siRNA involved in RNA interference | IEP | HCCA |
| BP | GO:0031047 | gene silencing by RNA | IEP | HCCA |
| BP | GO:0031050 | dsRNA processing | IEP | HCCA |
| BP | GO:0032875 | regulation of DNA endoreduplication | IEP | HCCA |
| CC | GO:0033597 | mitotic checkpoint complex | IEP | HCCA |
| BP | GO:0035196 | production of miRNAs involved in gene silencing by miRNA | IEP | HCCA |
| BP | GO:0042127 | regulation of cell population proliferation | IEP | HCCA |
| BP | GO:0048314 | embryo sac morphogenesis | IEP | HCCA |
| CC | GO:0048353 | primary endosperm nucleus | IEP | HCCA |
| BP | GO:0048437 | floral organ development | IEP | HCCA |
| BP | GO:0048446 | petal morphogenesis | IEP | HCCA |
| BP | GO:0048482 | plant ovule morphogenesis | IEP | HCCA |
| BP | GO:0048598 | embryonic morphogenesis | IEP | HCCA |
| BP | GO:0051567 | histone H3-K9 methylation | IEP | HCCA |
| BP | GO:0051607 | defense response to virus | IEP | HCCA |
| BP | GO:0061647 | histone H3-K9 modification | IEP | HCCA |
| BP | GO:0070918 | production of small RNA involved in gene silencing by RNA | IEP | HCCA |
| BP | GO:0090329 | regulation of DNA-dependent DNA replication | IEP | HCCA |
| CC | GO:0098797 | plasma membrane protein complex | IEP | HCCA |
| BP | GO:0140546 | defense response to symbiont | IEP | HCCA |
| CC | GO:1905360 | GTPase complex | IEP | HCCA |
No InterPro domains available for this sequence
| PLAZA 3.0 Dicots | AT1G49940 |