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  5. AT1G50010

AT1G50010


Description : tubulin alpha-2 chain


Gene families : OG_01_0000395 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G50010
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
Cre03.g190950 No alias Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre04.g216850 No alias Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g23500.1 No alias component alpha-Tubulin of alpha-beta-Tubulin heterodimer 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g00550.1 No alias component alpha-Tubulin of alpha-beta-Tubulin heterodimer 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_1010V3.1 No alias tubulin alpha-5 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_2000V3.1 No alias tubulin alpha-2 chain 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_08159.1 No alias component alpha-Tubulin of alpha-beta-Tubulin heterodimer 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005200 structural constituent of cytoskeleton ISS Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0007017 microtubule-based process TAS Interproscan
BP GO:0009651 response to salt stress IEP Interproscan
CC GO:0016020 membrane IDA Interproscan
CC GO:0045298 tubulin complex ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000820 regulation of glutamine family amino acid metabolic process IEP HCCA
MF GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity IEP HCCA
MF GO:0003878 ATP citrate synthase activity IEP HCCA
MF GO:0003979 UDP-glucose 6-dehydrogenase activity IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005773 vacuole IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006007 glucose catabolic process IEP HCCA
BP GO:0006065 UDP-glucuronate biosynthetic process IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006085 acetyl-CoA biosynthetic process IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006521 regulation of cellular amino acid metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006637 acyl-CoA metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007166 cell surface receptor signaling pathway IEP HCCA
BP GO:0007167 enzyme linked receptor protein signaling pathway IEP HCCA
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0008509 anion transmembrane transporter activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009226 nucleotide-sugar biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009346 ATP-independent citrate lyase complex IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009742 brassinosteroid mediated signaling pathway IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
MF GO:0009922 fatty acid elongase activity IEP HCCA
CC GO:0009923 fatty acid elongase complex IEP HCCA
BP GO:0010025 wax biosynthetic process IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0010166 wax metabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
MF GO:0015112 nitrate transmembrane transporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016125 sterol metabolic process IEP HCCA
BP GO:0016126 sterol biosynthetic process IEP HCCA
BP GO:0016128 phytosteroid metabolic process IEP HCCA
BP GO:0016129 phytosteroid biosynthetic process IEP HCCA
BP GO:0016131 brassinosteroid metabolic process IEP HCCA
BP GO:0016132 brassinosteroid biosynthetic process IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
BP GO:0019320 hexose catabolic process IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0030036 actin cytoskeleton organization IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
CC GO:0031225 anchored component of membrane IEP HCCA
BP GO:0033238 regulation of cellular amine metabolic process IEP HCCA
BP GO:0033239 negative regulation of cellular amine metabolic process IEP HCCA
MF GO:0033765 steroid dehydrogenase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035383 thioester metabolic process IEP HCCA
BP GO:0035384 thioester biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
BP GO:0042446 hormone biosynthetic process IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043401 steroid hormone mediated signaling pathway IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0045309 protein phosphorylated amino acid binding IEP HCCA
BP GO:0045763 negative regulation of cellular amino acid metabolic process IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046365 monosaccharide catabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046398 UDP-glucuronate metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046519 sphingoid metabolic process IEP HCCA
BP GO:0046520 sphingoid biosynthetic process IEP HCCA
BP GO:0046686 response to cadmium ion IEP HCCA
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0048653 anther development IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
MF GO:0051219 phosphoprotein binding IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0062014 negative regulation of small molecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071214 cellular response to abiotic stimulus IEP HCCA
BP GO:0071258 cellular response to gravity IEP HCCA
BP GO:0071616 acyl-CoA biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0080054 low-affinity nitrate transmembrane transporter activity IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
BP GO:0104004 cellular response to environmental stimulus IEP HCCA
BP GO:0120178 steroid hormone biosynthetic process IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901568 fatty acid derivative metabolic process IEP HCCA
BP GO:1901570 fatty acid derivative biosynthetic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
BP GO:1902005 regulation of proline biosynthetic process IEP HCCA
BP GO:1902006 negative regulation of proline biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:2000214 regulation of proline metabolic process IEP HCCA
BP GO:2000215 negative regulation of proline metabolic process IEP HCCA
BP GO:2000282 regulation of cellular amino acid biosynthetic process IEP HCCA
BP GO:2000283 negative regulation of cellular amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 263 392
IPR003008 Tubulin_FtsZ_GTPase 3 213
PLAZA 3.0 Dicots AT1G50010