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  5. AT1G50080

AT1G50080


Description : BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT1G60720.1); Has 42 Blast hits to 42 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG_01_0000215 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000215_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G50080
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT1G45063 No alias copper ion binding;electron carriers 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G11565 No alias No description available 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G28615 No alias RNA-directed DNA polymerase (reverse... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G59060 No alias BEST Arabidopsis thaliana protein match is: RNA-directed... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0002252 immune effector process IEP HCCA
BP GO:0002679 respiratory burst involved in defense response IEP HCCA
MF GO:0004033 aldo-keto reductase (NADP) activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004737 pyruvate decarboxylase activity IEP HCCA
MF GO:0005496 steroid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006863 purine nucleobase transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008142 oxysterol binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009741 response to brassinosteroid IEP HCCA
CC GO:0009986 cell surface IEP HCCA
MF GO:0010294 abscisic acid glucosyltransferase activity IEP HCCA
BP GO:0010411 xyloglucan metabolic process IEP HCCA
BP GO:0010541 acropetal auxin transport IEP HCCA
BP GO:0010583 response to cyclopentenone IEP HCCA
BP GO:0014070 response to organic cyclic compound IEP HCCA
MF GO:0015105 arsenite transmembrane transporter activity IEP HCCA
BP GO:0015700 arsenite transport IEP HCCA
BP GO:0015851 nucleobase transport IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0032934 sterol binding IEP HCCA
BP GO:0043090 amino acid import IEP HCCA
BP GO:0045730 respiratory burst IEP HCCA
BP GO:0048527 lateral root development IEP HCCA
BP GO:0048528 post-embryonic root development IEP HCCA
BP GO:0090696 post-embryonic plant organ development IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT1G50080