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  5. Cre12.g553100

Cre12.g553100


Description : Varicose-related protein OS=Arabidopsis thaliana


Gene families : OG_01_0000911 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000911_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g553100
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AT3G13300 No alias Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_3440V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_2660V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 120 204
No external refs found!